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Predict protein-ligand binding poses from PDB\u002FSMILES, confidence scores, virtual screening, for structure-based drug design. 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Preferred for standard drug discovery: SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fdatamol\u002FSKILL.md",[],[367,372,373,374,375,227,376,377,378,379,380,381,382,383,384,385,270,386,387,346],"clustering","rdkit","parsing","3D","pythonic","parallel","returns","use","Wrapper","objects","processing","native","interface","advanced","custom","standard",{"skillNo":389,"name":390,"nameZh":18,"description":391,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":392,"categories":393,"keywords":395,"publishedAt":241},"01M6AFC51VYX2FNMT8W2K572RX","datacommons-client","Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. 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Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fcosmic-database\u002FSKILL.md",[436],{"categoryNo":212,"categoryName":213,"taxonomyType":58,"taxonomyTypeDesc":59},[221,438,224,439,228,440,441,442,443,444,445,270,446,447],"cosmic database","authentication","mutations","somatic","query","signatures","mutation","precision oncology","gene","oncology",{"skillNo":449,"name":450,"nameZh":18,"description":451,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":452,"categories":453,"keywords":454,"publishedAt":241},"01M6AFBXYZ666FT50MKDCDS0MC","cobrapy","Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fcobrapy\u002FSKILL.md",[],[450,455,226,456,359,457,458,459,460,461,462,463,270,446,464],"engineering","sampling","flux","modeling","systems biology","systems","biology","metabolic engineering","cobra","constraint",{"skillNo":466,"name":467,"nameZh":18,"description":468,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":469,"categories":470,"keywords":473,"publishedAt":241},"01M6AFBV305KC1CDNMDHVD428A","clinvar-database","Query NCBI ClinVar for variant clinical significance. Search by gene\u002Fposition, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fclinvar-database\u002FSKILL.md",[471,472],{"categoryNo":212,"categoryName":213,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":218,"categoryName":219,"taxonomyType":58,"taxonomyTypeDesc":59},[221,474,475,476,477,228,442,478,479,480,481,482,483,484,270,446,485,486],"clinvar database","clinvar","search","api","annotate","ftp","clinical","variant clinical significance","via","position","Utilities","variant","NCBI",{"skillNo":488,"name":489,"nameZh":18,"description":490,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":491,"categories":492,"keywords":496,"publishedAt":241},"01M6AFBQZMCJMSZ94ANKW8KDQJ","clinpgx-database","Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fclinpgx-database\u002FSKILL.md",[493,494,495],{"categoryNo":212,"categoryName":213,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":215,"categoryName":216,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":218,"categoryName":219,"taxonomyType":58,"taxonomyTypeDesc":59},[221,497,498,499,225,228,500,501,442,502,503,504,270,446],"clinpgx database","clinpgx","guidelines","decisions","functions","drug interactions","pharmacogenomics","CPIC",{"skillNo":506,"name":507,"nameZh":18,"description":508,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":509,"categories":510,"keywords":514,"publishedAt":241},"01M6AFBN9ZNCVG8BY0XPZRSVBS","clinicaltrials-database","Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fclinicaltrials-database\u002FSKILL.md",[511,512,513],{"categoryNo":212,"categoryName":213,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":215,"categoryName":216,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":10,"categoryName":13,"taxonomyType":11,"taxonomyTypeDesc":12},[221,515,224,516,476,225,477,517,518,519,442,520,480,521,522,482,523,524,270,525],"clinicaltrials database","status","clinical research","export","location","matching","patient","id","condition","trials","phase",{"skillNo":527,"name":528,"nameZh":18,"description":529,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":530,"categories":531,"keywords":534,"publishedAt":241},"01M6AFBGE49BG9Q5GKNXJD79SM","clinical-reports","Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology\u002Fpathology\u002Flab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fclinical-reports\u002FSKILL.md",[532,533],{"categoryNo":218,"categoryName":219,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":49,"categoryName":50,"taxonomyType":11,"taxonomyTypeDesc":12},[535,536,480,537,538,499,539,540,541,542,543,544,545,546,547,548,549,550,551,521,238,552,553,554,555],"clinical reports","reports","support","documentation","validation","compliance","hipaa","regulatory compliance","gcp","templates","Tools","soap","Bash","read","write","edit","full","lab","pathology","radiology","e3",{"skillNo":557,"name":558,"nameZh":18,"description":559,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":560,"categories":561,"keywords":566,"publishedAt":241},"01M6AFBCDRSGYJHY1T7HVP30ZC","clinical-decision-support","Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX\u002FPDF format optimized for drug development, clinical research, and evidence synthesis.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fclinical-decision-support\u002FSKILL.md",[562,565],{"categoryNo":563,"categoryName":564,"taxonomyType":58,"taxonomyTypeDesc":59},"01JBSEEDCAT000000000000002","文档处理",{"categoryNo":215,"categoryName":216,"taxonomyType":58,"taxonomyTypeDesc":59},[537,567,568,569,480,570,224,571,499,255,572,250,540,542,311,226,547,548,549,550,314,573,536,574,521,575,576],"clinical decision support","decision","decision support","PDF","documents","generate","cds","evidence synthesis","biomarker","professional",{"skillNo":578,"name":579,"nameZh":18,"description":580,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":581,"categories":582,"keywords":589,"publishedAt":241},"01M6AFB8AANXE982W98NW9Z6TG","citation-management","Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fcitation-management\u002FSKILL.md",[583,586,587,588],{"categoryNo":584,"categoryName":585,"taxonomyType":58,"taxonomyTypeDesc":59},"01JBSEEDCAT000000000000018","写作与文案",{"categoryNo":215,"categoryName":216,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":218,"categoryName":219,"taxonomyType":58,"taxonomyTypeDesc":59},{"categoryNo":35,"categoryName":36,"taxonomyType":11,"taxonomyTypeDesc":12},[590,591,592,593,145,224,594,572,476,595,596,547,548,549,550,597,320,237,598,321,599,600,240],"citation management","management","Citation","writing","validate","metadata","Citations","pubmed","you","scholar","academic research",{"skillNo":602,"name":603,"nameZh":18,"description":604,"descriptionZh":18,"repositoryFullName":201,"ownerLogin":202,"ownerAvatarUrl":203,"ownerAccountNo":204,"ownerDisplayName":205,"repositoryNo":206,"starsCount":207,"licenseSpdxId":208,"licenseFileUrl":18,"sourceHtmlUrl":605,"categories":606,"keywords":608,"publishedAt":241},"01M6AFB4WS7J37C2XYVRANYX3E","cirq","Quantum computing framework for building, simulating, optimizing, and executing quantum circuits. Use this skill when working with quantum algorithms, quantum circuit design, quantum simulation (noiseless or noisy), running on quantum hardware (Google, IonQ, AQT, Pasqal), circuit optimization and compilation, noise modeling and characterization, or quantum experiments and benchmarking (VQE, QAOA, QPE, randomized benchmarking).","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fcirq\u002FSKILL.md",[607],{"categoryNo":218,"categoryName":219,"taxonomyType":58,"taxonomyTypeDesc":59},[603,279,145,310,609,610,611,612,613,379,614,615,458,616,617,238,618,619,270,240,620],"benchmarking","quantum computing","framework","Optimization","simulation","hardware","algorithms","quantum","quantum algorithms","qpe","circuit","running",157,18]