[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"skill:01M6DCPDMVGQ2PEE1TDP61R5CG":3,"skill-same:01M6DCPDMVGQ2PEE1TDP61R5CG":58},{"skillNo":4,"name":5,"nameZh":6,"description":7,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":16,"categories":17,"keywords":18,"publishedAt":33,"linkOnly":34,"markdownContent":35,"markdownBody":36,"frontMatter":37,"refName":38,"commitSha":39,"skillDirectory":40,"forksCount":14,"repositoryHtmlUrl":41,"repositoryHomepageUrl":6,"ownerHtmlUrl":42,"ownerBlogUrl":6,"ownerDescription":6,"updatedAt":43,"install":44,"resources":57},"01M6DCPDMVGQ2PEE1TDP61R5CG","jupyter-notebook",null,"Use when the user asks to create, scaffold, or edit Jupyter notebooks (`.ipynb`) for experiments, explorations, or tutorials; prefer the bundled templates and run the helper script `new_notebook.py` to generate a clean starting notebook.","Prekzursil\u002Fagent-skills-toolchain","Prekzursil","https:\u002F\u002Favatars.githubusercontent.com\u002Fu\u002F54636077?v=4","01M6DACZ1PCQHD99SCR1YXG28B","Andrei Mihai Visalon","01M6DACZ670WZF535V3WYYSS4Z",0,"MIT","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Fplatform\u002Frouting\u002Ffixtures\u002Fhome\u002F.agents\u002Fskills\u002Fjupyter-notebook\u002FSKILL.md",[],[19,20,21,22,23,24,25,26,27,28,29,30,31,32],"jupyter notebook","jupyter","notebook","experiments","scaffold","create","generate","run","jupyter notebooks","templates","edit","user","use","clean","2026-11-10 10:12:30",false,"---\nname: \"jupyter-notebook\"\ndescription: \"Use when the user asks to create, scaffold, or edit Jupyter notebooks (`.ipynb`) for experiments, explorations, or tutorials; prefer the bundled templates and run the helper script `new_notebook.py` to generate a clean starting notebook.\"\n---\n\n\n# Jupyter Notebook Skill\n\nCreate clean, reproducible Jupyter notebooks for two primary modes:\n\n- Experiments and exploratory analysis\n- Tutorials and teaching-oriented walkthroughs\n\nPrefer the bundled templates and the helper script for consistent structure and fewer JSON mistakes.\n\n## When to use\n- Create a new `.ipynb` notebook from scratch.\n- Convert rough notes or scripts into a structured notebook.\n- Refactor an existing notebook to be more reproducible and skimmable.\n- Build experiments or tutorials that will be read or re-run by other people.\n\n## Decision tree\n- If the request is exploratory, analytical, or hypothesis-driven, choose `experiment`.\n- If the request is instructional, step-by-step, or audience-specific, choose `tutorial`.\n- If editing an existing notebook, treat it as a refactor: preserve intent and improve structure.\n\n## Skill path (set once)\n\n```bash\nexport CODEX_HOME=\"${CODEX_HOME:-$HOME\u002F.codex}\"\nexport JUPYTER_NOTEBOOK_CLI=\"$CODEX_HOME\u002Fskills\u002Fjupyter-notebook\u002Fscripts\u002Fnew_notebook.py\"\n```\n\nUser-scoped skills install under `$CODEX_HOME\u002Fskills` (default: `~\u002F.codex\u002Fskills`).\n\n## Workflow\n1. Lock the intent.\nIdentify the notebook kind: `experiment` or `tutorial`.\nCapture the objective, audience, and what \"done\" looks like.\n\n2. Scaffold from the template.\nUse the helper script to avoid hand-authoring raw notebook JSON.\n\n```bash\nuv run --python 3.12 python \"$JUPYTER_NOTEBOOK_CLI\" \\\n  --kind experiment \\\n  --title \"Compare prompt variants\" \\\n  --out output\u002Fjupyter-notebook\u002Fcompare-prompt-variants.ipynb\n\n### Templates and helper script\n### Temp and output conventions\n### Dependencies (install only when needed)\n### Environment\n### Reference map\n","# Jupyter Notebook Skill\n\nCreate clean, reproducible Jupyter notebooks for two primary modes:\n\n- Experiments and exploratory analysis\n- Tutorials and teaching-oriented walkthroughs\n\nPrefer the bundled templates and the helper script for consistent structure and fewer JSON mistakes.\n\n## When to use\n- Create a new `.ipynb` notebook from scratch.\n- Convert rough notes or scripts into a structured notebook.\n- Refactor an existing notebook to be more reproducible and skimmable.\n- Build experiments or tutorials that will be read or re-run by other people.\n\n## Decision tree\n- If the request is exploratory, analytical, or hypothesis-driven, choose `experiment`.\n- If the request is instructional, step-by-step, or audience-specific, choose `tutorial`.\n- If editing an existing notebook, treat it as a refactor: preserve intent and improve structure.\n\n## Skill path (set once)\n\n```bash\nexport CODEX_HOME=\"${CODEX_HOME:-$HOME\u002F.codex}\"\nexport JUPYTER_NOTEBOOK_CLI=\"$CODEX_HOME\u002Fskills\u002Fjupyter-notebook\u002Fscripts\u002Fnew_notebook.py\"\n```\n\nUser-scoped skills install under `$CODEX_HOME\u002Fskills` (default: `~\u002F.codex\u002Fskills`).\n\n## Workflow\n1. Lock the intent.\nIdentify the notebook kind: `experiment` or `tutorial`.\nCapture the objective, audience, and what \"done\" looks like.\n\n2. Scaffold from the template.\nUse the helper script to avoid hand-authoring raw notebook JSON.\n\n```bash\nuv run --python 3.12 python \"$JUPYTER_NOTEBOOK_CLI\" \\\n  --kind experiment \\\n  --title \"Compare prompt variants\" \\\n  --out output\u002Fjupyter-notebook\u002Fcompare-prompt-variants.ipynb\n\n### Templates and helper script\n### Temp and output conventions\n### Dependencies (install only when needed)\n### Environment\n### Reference map\n",{"name":5,"description":7},"main","a298c929b6cbd662e1fce54302ce520d5ceea1a5","platform\u002Frouting\u002Ffixtures\u002Fhome\u002F.agents\u002Fskills\u002Fjupyter-notebook","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain","https:\u002F\u002Fgithub.com\u002FPrekzursil","2026-11-02 14:30:57",{"source":8,"skillName":5,"commands":45,"prompt":55,"zipAvailable":56},[46,49,52],{"tool":47,"command":48},"npx","npx skills add Prekzursil\u002Fagent-skills-toolchain --skill jupyter-notebook",{"tool":50,"command":51},"bunx","bunx skills add Prekzursil\u002Fagent-skills-toolchain --skill jupyter-notebook",{"tool":53,"command":54},"pnpm","pnpm dlx skills add Prekzursil\u002Fagent-skills-toolchain --skill jupyter-notebook","安装技能，技能地址：https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Fplatform\u002Frouting\u002Ffixtures\u002Fhome\u002F.agents\u002Fskills\u002Fjupyter-notebook\u002FSKILL.md",true,[],[59,80,111,138,152,167],{"skillNo":60,"name":61,"nameZh":6,"description":62,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":63,"categories":64,"keywords":65,"publishedAt":33},"01M6DF7D7478R55P46REYH4QAC","clarify-requirements","Resolve genuine pre-execution ambiguity by scanning repo context, generating 1-6 grounded options, and asking 1-3 focused questions via AskUserQuestion. NOT for mid-task use (injection risk); NOT when the goal is already unambiguous; use to disambiguate vague prompts before any file edits.","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Fworkspace-hooks\u002Fskills\u002Fclarify-requirements\u002FSKILL.md",[],[66,67,68,69,70,71,72,73,74,31,75,76,77,78,79],"clarify requirements","clarify","requirements","risk","options","task","prompts","goal","scanning","context","repo","injection","execution","file",{"skillNo":81,"name":82,"nameZh":6,"description":83,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":84,"categories":85,"keywords":91,"publishedAt":33},"01M6DF79CA4BHJS66J8EZDBPWJ","openmm-md","Run FREE, open-source, Windows-native GPU molecular dynamics via the openmm-md MCP (OpenMM + CUDA on the local NVIDIA GPU). Use for protein \u002F protein-ligand MD when you want a free stack or are on Windows without a Schrodinger license. Covers the full workflow (prepare, solvate, minimize, equilibrate, production, analyze, mmgbsa) AND an honest decision guide vs Schrodinger Desmond, including how to run Desmond legitimately on Linux or a cloud GPU with a real license. This is a deliberately LESSER free alternative and does NOT replace the schrodinger MCP tools. Do NOT use it to pick a free tool when a validated FEP+, WaterMap, IFD-MD, or Prime MM-GBSA result is actually required.","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Fmcp\u002Fopenmm-md-mcp\u002Fskill\u002Fopenmm-md\u002FSKILL.md",[86],{"categoryNo":87,"categoryName":88,"taxonomyType":89,"taxonomyTypeDesc":90},"01JBSEEDCAT000000000000023","Skill与智能体开发","SCENARIO","使用场景",[92,93,94,95,96,97,98,99,100,101,102,103,104,105,31,106,107,108,109,110],"openmm md","how","decision","pick","linux","analyze","tool","stack","open","NVIDIA","gpu","license","workflow","windows","free","molecular dynamics","local","do","MCP",{"skillNo":112,"name":113,"nameZh":6,"description":114,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":115,"categories":116,"keywords":123,"publishedAt":33},"01M6DF76C1MG85VEWP8VZCBNMN","visual-review","Take screenshots of web pages and UI using Playwright for visual review and iteration","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fvisual-review\u002FSKILL.md",[117,120],{"categoryNo":118,"categoryName":119,"taxonomyType":89,"taxonomyTypeDesc":90},"01JBSEEDCAT000000000000003","演示文稿",{"categoryNo":121,"categoryName":122,"taxonomyType":89,"taxonomyTypeDesc":90},"01JBSEEDCAT000000000000008","测试与质量",[124,125,126,127,128,129,130,131,132,133,93,134,135,136,137],"review","visual","visual review","pages","web","false","iteration","take","check","slides","ui","screenshot","playwright","screenshots",{"skillNo":139,"name":140,"nameZh":6,"description":141,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":142,"categories":143,"keywords":144,"publishedAt":33},"01M6DF73AQVCBZKEN0YXEX9FXP","status","Diagnostic status report — shows metaswarm installation state, project setup, and potential issues","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fstatus\u002FSKILL.md",[],[140,145,146,147,148,149,150,151],"setup","report","project","installation","project setup","issues","state",{"skillNo":153,"name":154,"nameZh":6,"description":155,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":156,"categories":157,"keywords":159,"publishedAt":33},"01M6DF6X6C2XB0P6GX76P7TTYV","start","Use when starting work on any task, when the user mentions metaswarm, or when the user wants to begin tracked development work","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fstart\u002FSKILL.md",[158],{"categoryNo":87,"categoryName":88,"taxonomyType":89,"taxonomyTypeDesc":90},[154,160,71,161,162,163,31,30,164,165,166],"start issue","issue","ready","work on issue","work","work on","development",{"skillNo":168,"name":145,"nameZh":6,"description":169,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":170,"categories":171,"keywords":172,"publishedAt":33},"01M6DF6QMJ9AJKFKHHKRT005PQ","Interactive project setup — detects your project, configures metaswarm, writes project-local files","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fsetup\u002FSKILL.md",[],[145,147,108,173,149,174],"files","interactive"]