[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"skill:01M6AFEAB6RHM2V8PHSZNVC6K3":3,"skill-same:01M6AFEAB6RHM2V8PHSZNVC6K3":102},{"skillNo":4,"name":5,"nameZh":6,"description":7,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":16,"categories":17,"keywords":23,"publishedAt":45,"linkOnly":46,"markdownContent":47,"markdownBody":48,"frontMatter":49,"refName":50,"commitSha":51,"skillDirectory":52,"forksCount":53,"repositoryHtmlUrl":54,"repositoryHomepageUrl":55,"ownerHtmlUrl":56,"ownerBlogUrl":57,"ownerDescription":58,"updatedAt":59,"install":60,"resources":73},"01M6AFEAB6RHM2V8PHSZNVC6K3","geniml",null,"This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.","davila7\u002Fclaude-code-templates","davila7","https:\u002F\u002Favatars.githubusercontent.com\u002Fu\u002F6216945?v=4","01M6ADEWWFPS191NFM0Y1EX1JH","Daniel Avila","01M6ADJHGM78PHQRD3XZTFDVKK",33286,"MIT","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fscientific\u002Fgeniml\u002FSKILL.md",[18],{"categoryNo":19,"categoryName":20,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000023","Skill与智能体开发","SCENARIO","使用场景",[5,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44],"consensus","when","single","for","seq","machine","bed","collections","feature","files","use","machine learning","learning","analysis","data","file","embeddings","tasks","training","ml","accessibility","2026-11-10 10:12:30",false,"---\nname: geniml\ndescription: This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.\n---\n\n# Geniml: Genomic Interval Machine Learning\n\n## Overview\n\nGeniml is a Python package for building machine learning models on genomic interval data from BED files. It provides unsupervised methods for learning embeddings of genomic regions, single cells, and metadata labels, enabling similarity searches, clustering, and downstream ML tasks.\n\n## Installation\n\nInstall geniml using uv:\n\n```bash\nuv uv pip install geniml\n```\n\nFor ML dependencies (PyTorch, etc.):\n\n```bash\nuv uv pip install 'geniml[ml]'\n```\n\nDevelopment version from GitHub:\n\n```bash\nuv uv pip install git+https:\u002F\u002Fgithub.com\u002Fdatabio\u002Fgeniml.git\n```\n\n## Core Capabilities\n\nGeniml provides five primary capabilities, each detailed in dedicated reference files:\n\n### 1. Region2Vec: Genomic Region Embeddings\n\nTrain unsupervised embeddings of genomic regions using word2vec-style learning.\n\n**Use for:** Dimensionality reduction of BED files, region similarity analysis, feature vectors for downstream ML.\n\n**Workflow:**\n1. Tokenize BED files using a universe reference\n2. Train Region2Vec model on tokens\n3. Generate embeddings for regions\n\n**Reference:** See `references\u002Fregion2vec.md` for detailed workflow, parameters, and examples.\n\n### 2. BEDspace: Joint Region and Metadata Embeddings\n\nTrain shared embeddings for region sets and metadata labels using StarSpace.\n\n**Use for:** Metadata-aware searches, cross-modal queries (region→label or label→region), joint analysis of genomic content and experimental conditions.\n\n**Workflow:**\n1. Preprocess regions and metadata\n2. Train BEDspace model\n3. Compute distances\n4. Query across regions and labels\n\n**Reference:** See `references\u002Fbedspace.md` for detailed workflow, search types, and examples.\n\n### 3. scEmbed: Single-Cell Chromatin Accessibility Embeddings\n\nTrain Region2Vec models on single-cell ATAC-seq data for cell-level embeddings.\n\n**Use for:** scATAC-seq clustering, cell-type annotation, dimensionality reduction of single cells, integration with scanpy workflows.\n\n**Workflow:**\n1. Prepare AnnData with peak coordinates\n2. Pre-tokenize cells\n3. Train scEmbed model\n4. Generate cell embeddings\n5. Cluster and visualize with scanpy\n\n**Reference:** See `references\u002Fscembed.md` for detailed workflow, parameters, and examples.\n\n### 4. Consensus Peaks: Universe Building\n\nBuild reference peak sets (universes) from BED file collections using multiple statistical methods.\n\n**Use for:** Creating tokenization references, standardizing regions across datasets, defining consensus features with statistical rigor.\n\n**Workflow:**\n1. Combine BED files\n2. Generate coverage tracks\n3. Build universe using CC, CCF, ML, or HMM method\n\n**Methods:**\n- **CC (Coverage Cutoff)**: Simple threshold-based\n- **CCF (Coverage Cutoff Flexible)**: Confidence intervals for boundaries\n- **ML (Maximum Likelihood)**: Probabilistic modeling of positions\n- **HMM (Hidden Markov Model)**: Complex state modeling\n\n**Reference:** See `references\u002Fconsensus_peaks.md` for method comparison, parameters, and examples.\n\n### 5. Utilities: Supporting Tools\n\nAdditional tools for caching, randomization, evaluation, and search.\n\n**Available utilities:**\n- **BBClient**: BED file caching for repeated access\n- **BEDshift**: Randomization preserving genomic context\n- **Evaluation**: Metrics for embedding quality (silhouette, Davies-Bouldin, etc.)\n- **Tokenization**: Region tokenization utilities (hard, soft, universe-based)\n- **Text2BedNN**: Neural search backends for genomic queries\n\n**Reference:** See `references\u002Futilities.md` for detailed usage of each utility.\n\n## Common Workflows\n\n### Basic Region Embedding Pipeline\n\n```python\nfrom geniml.tokenization import hard_tokenization\nfrom geniml.region2vec import region2vec\nfrom geniml.evaluation import evaluate_embeddings\n\n# Step 1: Tokenize BED files\nhard_tokenization(\n    src_folder='bed_files\u002F',\n    dst_folder='tokens\u002F',\n    universe_file='universe.bed',\n    p_value_threshold=1e-9\n)\n\n# Step 2: Train Region2Vec\nregion2vec(\n    token_folder='tokens\u002F',\n    save_dir='model\u002F',\n    num_shufflings=1000,\n    embedding_dim=100\n)\n\n# Step 3: Evaluate\nmetrics = evaluate_embeddings(\n    embeddings_file='model\u002Fembeddings.npy',\n    labels_file='metadata.csv'\n)\n```\n\n### scATAC-seq Analysis Pipeline\n\n```python\nimport scanpy as sc\nfrom geniml.scembed import ScEmbed\nfrom geniml.io import tokenize_cells\n\n# Step 1: Load data\nadata = sc.read_h5ad('scatac_data.h5ad')\n\n# Step 2: Tokenize cells\ntokenize_cells(\n    adata='scatac_data.h5ad',\n    universe_file='universe.bed',\n    output='tokens.parquet'\n)\n\n# Step 3: Train scEmbed\nmodel = ScEmbed(embedding_dim=100)\nmodel.train(dataset='tokens.parquet', epochs=100)\n\n# Step 4: Generate embeddings\nembeddings = model.encode(adata)\nadata.obsm['scembed_X'] = embeddings\n\n# Step 5: Cluster with scanpy\nsc.pp.neighbors(adata, use_rep='scembed_X')\nsc.tl.leiden(adata)\nsc.tl.umap(adata)\n```\n\n### Universe Building and Evaluation\n\n```bash\n# Generate coverage\ncat bed_files\u002F*.bed > combined.bed\nuniwig -m 25 combined.bed chrom.sizes coverage\u002F\n\n# Build universe with coverage cutoff\ngeniml universe build cc \\\n  --coverage-folder coverage\u002F \\\n  --output-file universe.bed \\\n  --cutoff 5 \\\n  --merge 100 \\\n  --filter-size 50\n\n# Evaluate universe quality\ngeniml universe evaluate \\\n  --universe universe.bed \\\n  --coverage-folder coverage\u002F \\\n  --bed-folder bed_files\u002F\n```\n\n## CLI Reference\n\nGeniml provides command-line interfaces for major operations:\n\n```bash\n# Region2Vec training\ngeniml region2vec --token-folder tokens\u002F --save-dir model\u002F --num-shuffle 1000\n\n# BEDspace preprocessing\ngeniml bedspace preprocess --input regions\u002F --metadata labels.csv --universe universe.bed\n\n# BEDspace training\ngeniml bedspace train --input preprocessed.txt --output model\u002F --dim 100\n\n# BEDspace search\ngeniml bedspace search -t r2l -d distances.pkl -q query.bed -n 10\n\n# Universe building\ngeniml universe build cc --coverage-folder coverage\u002F --output universe.bed --cutoff 5\n\n# BEDshift randomization\ngeniml bedshift --input peaks.bed --genome hg38 --preserve-chrom --iterations 100\n```\n\n## When to Use Which Tool\n\n**Use Region2Vec when:**\n- Working with bulk genomic data (ChIP-seq, ATAC-seq, etc.)\n- Need unsupervised embeddings without metadata\n- Comparing region sets across experiments\n- Building features for downstream supervised learning\n\n**Use BEDspace when:**\n- Metadata labels available (cell types, tissues, conditions)\n- Need to query regions by metadata or vice versa\n- Want joint embedding space for regions and labels\n- Building searchable genomic databases\n\n**Use scEmbed when:**\n- Analyzing single-cell ATAC-seq data\n- Clustering cells by chromatin accessibility\n- Annotating cell types from scATAC-seq\n- Integration with scanpy is desired\n\n**Use Universe Building when:**\n- Need reference peak sets for tokenization\n- Combining multiple experiments into consensus\n- Want statistically rigorous region definitions\n- Building standard references for a project\n\n**Use Utilities when:**\n- Need to cache remote BED files (BBClient)\n- Generating null models for statistics (BEDshift)\n- Evaluating embedding quality (Evaluation)\n- Building search interfaces (Text2BedNN)\n\n## Best Practices\n\n### General Guidelines\n\n- **Universe quality is critical**: Invest time in building comprehensive, well-constructed universes\n- **Tokenization validation**: Check coverage (>80% ideal) before training\n- **Parameter tuning**: Experiment with embedding dimensions, learning rates, and training epochs\n- **Evaluation**: Always validate embeddings with multiple metrics and visualizations\n- **Documentation**: Record parameters and random seeds for reproducibility\n\n### Performance Considerations\n\n- **Pre-tokenization**: For scEmbed, always pre-tokenize cells for faster training\n- **Memory management**: Large datasets may require batch processing or downsampling\n- **Computational resources**: ML\u002FHMM universe methods are computationally intensive\n- **Model caching**: Use BBClient to avoid repeated downloads\n\n### Integration Patterns\n\n- **With scanpy**: scEmbed embeddings integrate seamlessly as `adata.obsm` entries\n- **With BEDbase**: Use BBClient for accessing remote BED repositories\n- **With Hugging Face**: Export trained models for sharing and reproducibility\n- **With R**: Use reticulate for R integration (see utilities reference)\n\n## Related Projects\n\nGeniml is part of the BEDbase ecosystem:\n\n- **BEDbase**: Unified platform for genomic regions\n- **BEDboss**: Processing pipeline for BED files\n- **Gtars**: Genomic tools and utilities\n- **BBClient**: Client for BEDbase repositories\n\n## Additional Resources\n\n- **Documentation**: https:\u002F\u002Fdocs.bedbase.org\u002Fgeniml\u002F\n- **GitHub**: https:\u002F\u002Fgithub.com\u002Fdatabio\u002Fgeniml\n- **Pre-trained models**: Available on Hugging Face (databio organization)\n- **Publications**: Cited in documentation for methodological details\n\n## Troubleshooting\n\n**\"Tokenization coverage too low\":**\n- Check universe quality and completeness\n- Adjust p-value threshold (try 1e-6 instead of 1e-9)\n- Ensure universe matches genome assembly\n\n**\"Training not converging\":**\n- Adjust learning rate (try 0.01-0.05 range)\n- Increase training epochs\n- Check data quality and preprocessing\n\n**\"Out of memory errors\":**\n- Reduce batch size for scEmbed\n- Process data in chunks\n- Use pre-tokenization for single-cell data\n\n**\"StarSpace not found\" (BEDspace):**\n- Install StarSpace separately: https:\u002F\u002Fgithub.com\u002Ffacebookresearch\u002FStarSpace\n- Set `--path-to-starspace` parameter correctly\n\nFor detailed troubleshooting and method-specific issues, consult the appropriate reference file.\n","# Geniml: Genomic Interval Machine Learning\n\n## Overview\n\nGeniml is a Python package for building machine learning models on genomic interval data from BED files. It provides unsupervised methods for learning embeddings of genomic regions, single cells, and metadata labels, enabling similarity searches, clustering, and downstream ML tasks.\n\n## Installation\n\nInstall geniml using uv:\n\n```bash\nuv uv pip install geniml\n```\n\nFor ML dependencies (PyTorch, etc.):\n\n```bash\nuv uv pip install 'geniml[ml]'\n```\n\nDevelopment version from GitHub:\n\n```bash\nuv uv pip install git+https:\u002F\u002Fgithub.com\u002Fdatabio\u002Fgeniml.git\n```\n\n## Core Capabilities\n\nGeniml provides five primary capabilities, each detailed in dedicated reference files:\n\n### 1. Region2Vec: Genomic Region Embeddings\n\nTrain unsupervised embeddings of genomic regions using word2vec-style learning.\n\n**Use for:** Dimensionality reduction of BED files, region similarity analysis, feature vectors for downstream ML.\n\n**Workflow:**\n1. Tokenize BED files using a universe reference\n2. Train Region2Vec model on tokens\n3. Generate embeddings for regions\n\n**Reference:** See `references\u002Fregion2vec.md` for detailed workflow, parameters, and examples.\n\n### 2. BEDspace: Joint Region and Metadata Embeddings\n\nTrain shared embeddings for region sets and metadata labels using StarSpace.\n\n**Use for:** Metadata-aware searches, cross-modal queries (region→label or label→region), joint analysis of genomic content and experimental conditions.\n\n**Workflow:**\n1. Preprocess regions and metadata\n2. Train BEDspace model\n3. Compute distances\n4. Query across regions and labels\n\n**Reference:** See `references\u002Fbedspace.md` for detailed workflow, search types, and examples.\n\n### 3. scEmbed: Single-Cell Chromatin Accessibility Embeddings\n\nTrain Region2Vec models on single-cell ATAC-seq data for cell-level embeddings.\n\n**Use for:** scATAC-seq clustering, cell-type annotation, dimensionality reduction of single cells, integration with scanpy workflows.\n\n**Workflow:**\n1. Prepare AnnData with peak coordinates\n2. Pre-tokenize cells\n3. Train scEmbed model\n4. Generate cell embeddings\n5. Cluster and visualize with scanpy\n\n**Reference:** See `references\u002Fscembed.md` for detailed workflow, parameters, and examples.\n\n### 4. Consensus Peaks: Universe Building\n\nBuild reference peak sets (universes) from BED file collections using multiple statistical methods.\n\n**Use for:** Creating tokenization references, standardizing regions across datasets, defining consensus features with statistical rigor.\n\n**Workflow:**\n1. Combine BED files\n2. Generate coverage tracks\n3. Build universe using CC, CCF, ML, or HMM method\n\n**Methods:**\n- **CC (Coverage Cutoff)**: Simple threshold-based\n- **CCF (Coverage Cutoff Flexible)**: Confidence intervals for boundaries\n- **ML (Maximum Likelihood)**: Probabilistic modeling of positions\n- **HMM (Hidden Markov Model)**: Complex state modeling\n\n**Reference:** See `references\u002Fconsensus_peaks.md` for method comparison, parameters, and examples.\n\n### 5. Utilities: Supporting Tools\n\nAdditional tools for caching, randomization, evaluation, and search.\n\n**Available utilities:**\n- **BBClient**: BED file caching for repeated access\n- **BEDshift**: Randomization preserving genomic context\n- **Evaluation**: Metrics for embedding quality (silhouette, Davies-Bouldin, etc.)\n- **Tokenization**: Region tokenization utilities (hard, soft, universe-based)\n- **Text2BedNN**: Neural search backends for genomic queries\n\n**Reference:** See `references\u002Futilities.md` for detailed usage of each utility.\n\n## Common Workflows\n\n### Basic Region Embedding Pipeline\n\n```python\nfrom geniml.tokenization import hard_tokenization\nfrom geniml.region2vec import region2vec\nfrom geniml.evaluation import evaluate_embeddings\n\n# Step 1: Tokenize BED files\nhard_tokenization(\n    src_folder='bed_files\u002F',\n    dst_folder='tokens\u002F',\n    universe_file='universe.bed',\n    p_value_threshold=1e-9\n)\n\n# Step 2: Train Region2Vec\nregion2vec(\n    token_folder='tokens\u002F',\n    save_dir='model\u002F',\n    num_shufflings=1000,\n    embedding_dim=100\n)\n\n# Step 3: Evaluate\nmetrics = evaluate_embeddings(\n    embeddings_file='model\u002Fembeddings.npy',\n    labels_file='metadata.csv'\n)\n```\n\n### scATAC-seq Analysis Pipeline\n\n```python\nimport scanpy as sc\nfrom geniml.scembed import ScEmbed\nfrom geniml.io import tokenize_cells\n\n# Step 1: Load data\nadata = sc.read_h5ad('scatac_data.h5ad')\n\n# Step 2: Tokenize cells\ntokenize_cells(\n    adata='scatac_data.h5ad',\n    universe_file='universe.bed',\n    output='tokens.parquet'\n)\n\n# Step 3: Train scEmbed\nmodel = ScEmbed(embedding_dim=100)\nmodel.train(dataset='tokens.parquet', epochs=100)\n\n# Step 4: Generate embeddings\nembeddings = model.encode(adata)\nadata.obsm['scembed_X'] = embeddings\n\n# Step 5: Cluster with scanpy\nsc.pp.neighbors(adata, use_rep='scembed_X')\nsc.tl.leiden(adata)\nsc.tl.umap(adata)\n```\n\n### Universe Building and Evaluation\n\n```bash\n# Generate coverage\ncat bed_files\u002F*.bed > combined.bed\nuniwig -m 25 combined.bed chrom.sizes coverage\u002F\n\n# Build universe with coverage cutoff\ngeniml universe build cc \\\n  --coverage-folder coverage\u002F \\\n  --output-file universe.bed \\\n  --cutoff 5 \\\n  --merge 100 \\\n  --filter-size 50\n\n# Evaluate universe quality\ngeniml universe evaluate \\\n  --universe universe.bed \\\n  --coverage-folder coverage\u002F \\\n  --bed-folder bed_files\u002F\n```\n\n## CLI Reference\n\nGeniml provides command-line interfaces for major operations:\n\n```bash\n# Region2Vec training\ngeniml region2vec --token-folder tokens\u002F --save-dir model\u002F --num-shuffle 1000\n\n# BEDspace preprocessing\ngeniml bedspace preprocess --input regions\u002F --metadata labels.csv --universe universe.bed\n\n# BEDspace training\ngeniml bedspace train --input preprocessed.txt --output model\u002F --dim 100\n\n# BEDspace search\ngeniml bedspace search -t r2l -d distances.pkl -q query.bed -n 10\n\n# Universe building\ngeniml universe build cc --coverage-folder coverage\u002F --output universe.bed --cutoff 5\n\n# BEDshift randomization\ngeniml bedshift --input peaks.bed --genome hg38 --preserve-chrom --iterations 100\n```\n\n## When to Use Which Tool\n\n**Use Region2Vec when:**\n- Working with bulk genomic data (ChIP-seq, ATAC-seq, etc.)\n- Need unsupervised embeddings without metadata\n- Comparing region sets across experiments\n- Building features for downstream supervised learning\n\n**Use BEDspace when:**\n- Metadata labels available (cell types, tissues, conditions)\n- Need to query regions by metadata or vice versa\n- Want joint embedding space for regions and labels\n- Building searchable genomic databases\n\n**Use scEmbed when:**\n- Analyzing single-cell ATAC-seq data\n- Clustering cells by chromatin accessibility\n- Annotating cell types from scATAC-seq\n- Integration with scanpy is desired\n\n**Use Universe Building when:**\n- Need reference peak sets for tokenization\n- Combining multiple experiments into consensus\n- Want statistically rigorous region definitions\n- Building standard references for a project\n\n**Use Utilities when:**\n- Need to cache remote BED files (BBClient)\n- Generating null models for statistics (BEDshift)\n- Evaluating embedding quality (Evaluation)\n- Building search interfaces (Text2BedNN)\n\n## Best Practices\n\n### General Guidelines\n\n- **Universe quality is critical**: Invest time in building comprehensive, well-constructed universes\n- **Tokenization validation**: Check coverage (>80% ideal) before training\n- **Parameter tuning**: Experiment with embedding dimensions, learning rates, and training epochs\n- **Evaluation**: Always validate embeddings with multiple metrics and visualizations\n- **Documentation**: Record parameters and random seeds for reproducibility\n\n### Performance Considerations\n\n- **Pre-tokenization**: For scEmbed, always pre-tokenize cells for faster training\n- **Memory management**: Large datasets may require batch processing or downsampling\n- **Computational resources**: ML\u002FHMM universe methods are computationally intensive\n- **Model caching**: Use BBClient to avoid repeated downloads\n\n### Integration Patterns\n\n- **With scanpy**: scEmbed embeddings integrate seamlessly as `adata.obsm` entries\n- **With BEDbase**: Use BBClient for accessing remote BED repositories\n- **With Hugging Face**: Export trained models for sharing and reproducibility\n- **With R**: Use reticulate for R integration (see utilities reference)\n\n## Related Projects\n\nGeniml is part of the BEDbase ecosystem:\n\n- **BEDbase**: Unified platform for genomic regions\n- **BEDboss**: Processing pipeline for BED files\n- **Gtars**: Genomic tools and utilities\n- **BBClient**: Client for BEDbase repositories\n\n## Additional Resources\n\n- **Documentation**: https:\u002F\u002Fdocs.bedbase.org\u002Fgeniml\u002F\n- **GitHub**: https:\u002F\u002Fgithub.com\u002Fdatabio\u002Fgeniml\n- **Pre-trained models**: Available on Hugging Face (databio organization)\n- **Publications**: Cited in documentation for methodological details\n\n## Troubleshooting\n\n**\"Tokenization coverage too low\":**\n- Check universe quality and completeness\n- Adjust p-value threshold (try 1e-6 instead of 1e-9)\n- Ensure universe matches genome assembly\n\n**\"Training not converging\":**\n- Adjust learning rate (try 0.01-0.05 range)\n- Increase training epochs\n- Check data quality and preprocessing\n\n**\"Out of memory errors\":**\n- Reduce batch size for scEmbed\n- Process data in chunks\n- Use pre-tokenization for single-cell data\n\n**\"StarSpace not found\" (BEDspace):**\n- Install StarSpace separately: https:\u002F\u002Fgithub.com\u002Ffacebookresearch\u002FStarSpace\n- Set `--path-to-starspace` parameter correctly\n\nFor detailed troubleshooting and method-specific issues, consult the appropriate reference 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DeFi liquidity pools before providing liquidity. Returns a 0-100 pool score and an Enter\u002FHold\u002FExit\u002FReduce\u002FAvoid verdict with calibrated confidence for ~68,800 Solana pools and 575 EVM pools, plus a public miss-inclusive track record. Use when asked whether a pool is worth LPing into, which pools look best right now, or how accurate the scores have actually been.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fweb-data\u002Fwealthville-pool-scoring\u002FSKILL.md",[109],{"categoryNo":19,"categoryName":20,"taxonomyType":21,"taxonomyTypeDesc":22},[111,112,113,114,115,27,116,117,34,25,118,119,120,121,122,123,124,125,126,127],"scoring","pool","wealthville pool scoring","liquidity","which","exit","now","reduce","with","record","track","verdict","evm","solana","how","public","look",{"skillNo":129,"name":130,"nameZh":6,"description":131,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":132,"categories":133,"keywords":135,"publishedAt":45},"01M70MB6VR8ERJ4EM8D5KHBMEV","technical-debt-auditor","Scans a codebase and produces a quantified technical debt report with a prioritized remediation plan. Analyzes dead code, TODO\u002FFIXME\u002FHACK markers, dependency staleness, complexity hotspots, code duplication signals, test coverage gaps, unused exports, and outdated patterns. Use this skill when the user asks to audit their codebase for tech debt, wants a health check of their code quality, says things like \"where should I focus refactoring\", \"find code smells\", \"audit my codebase\", \"what technical debt do we have\", \"prioritize cleanup work\", or asks about code quality metrics. Also trigger when the user mentions \"code rot\", \"legacy cleanup\", \"refactoring priorities\", or wants to understand the overall health of a project before a major effort. Trigger even if the user doesn't say \"technical debt\" explicitly — any request to systematically assess code quality and identify improvement priorities belongs here.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fdevelopment\u002Ftechnical-debt-auditor\u002FSKILL.md",[134],{"categoryNo":19,"categoryName":20,"taxonomyType":21,"taxonomyTypeDesc":22},[136,137,138,139,140,141,142,143,144,145,146,25,147,148,149,150,151,152,153,154],"technical debt","debt","technical","technical debt auditor","auditor","coverage","complexity","markers","project","cleanup","unused","code","todo","work","plan","focus","signals","audit","dependency",{"skillNo":156,"name":157,"nameZh":6,"description":158,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":159,"categories":160,"keywords":170,"publishedAt":45},"01M70KPYH9QNHCNME5GJQGE22K","readonly-sql-guard","Make an agent's database access provably read-only. Use when an agent runs caller-supplied SQL against a production\u002FERP\u002Fanalytics database (a \"query\" MCP tool, text-to-SQL, an admin console), or when reviewing DB-access code for write\u002FDDL\u002Fside-effect\u002Ftransaction-escape risks. Checks what a statement CALLS, not just its shape.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fdatabase\u002Freadonly-sql-guard\u002FSKILL.md",[161,164,165],{"categoryNo":162,"categoryName":163,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000010","后端与接口",{"categoryNo":19,"categoryName":20,"taxonomyType":21,"taxonomyTypeDesc":22},{"categoryNo":166,"categoryName":167,"taxonomyType":168,"taxonomyTypeDesc":169},"01JBSEEDCAT000000000000033","数据分析师","PROFESSION","适用职业",[171,172,173,174,175,176,177,27,178,179,180,181,182,183,184,34,185,186,25,187],"readonly","guard","sql guard","sql","readonly sql guard","erp","effect","read-only","db","just","tool","calls","only","MCP","access","database","query",{"skillNo":189,"name":190,"nameZh":6,"description":191,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":192,"licenseFileUrl":193,"sourceHtmlUrl":194,"categories":195,"keywords":199,"publishedAt":45},"01M6AFY6F7CC2BBZP1QD6VTNVC","web-artifacts-builder","Suite of tools for creating elaborate, multi-component claude.ai HTML artifacts using modern frontend web technologies (React, Tailwind CSS, shadcn\u002Fui). Use for complex artifacts requiring state management, routing, or shadcn\u002Fui components - not for simple single-file HTML\u002FJSX artifacts.","Apache-2.0","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Futilities\u002Fweb-artifacts-builder\u002FLICENSE.txt","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Futilities\u002Fweb-artifacts-builder\u002FSKILL.md",[196],{"categoryNo":197,"categoryName":198,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000009","前端开发",[200,201,202,203,204,205,206,207,208,209,210,211,212,39,213,214,215,216,217,218,219,220,27,221],"artifacts builder","web","web artifacts builder","artifacts","builder","state","routing","state management","component","css","frontend","ui","Tools","components","shadcn","react","Tailwind","suite","jsx","html","single-file","ui components",{"skillNo":223,"name":224,"nameZh":6,"description":225,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":192,"licenseFileUrl":226,"sourceHtmlUrl":227,"categories":228,"keywords":233,"publishedAt":45},"01M6AFWF33SFV9Z3SF4PEEE4BF","webapp-testing","Toolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fsecurity\u002Fwebapp-testing\u002FLICENSE.txt","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fsecurity\u002Fwebapp-testing\u002FSKILL.md",[229,232],{"categoryNo":230,"categoryName":231,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000008","测试与质量",{"categoryNo":197,"categoryName":198,"taxonomyType":21,"taxonomyTypeDesc":22},[234,235,236,237,238,201,239,210,211,240,241,242,243,27,244,119,245],"webapp testing","testing","webapp","browser","playwright","applications","debugging","toolkit","logs","screenshots","local","behavior",{"skillNo":247,"name":248,"nameZh":6,"description":249,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":192,"licenseFileUrl":250,"sourceHtmlUrl":251,"categories":252,"keywords":260,"publishedAt":45},"01M6AF67Q67JJJ5V51JR2P52KA","discernment-nudge","After you give a substantive answer or draft that the user may act on — advice or recommendations, drafted artifacts such as goals, plans, pitches, proposals, or emails, estimates or projections, analysis or interpretation of data, factual claims they may rely on, or a multi-step argument — invoke this skill BEFORE finalizing your reply and then, if it applies, append 2-3 short follow-up questions, each tied to something specific in what you just produced, that help the user check key facts, probe the reasoning or assumptions, and notice missing context. Do this at most once per conversation. Skip it when the user asked a trivial how-to or simple lookup, wants a purely educational explanation, asked you only to format, convert, or assemble a file from content they provided, is writing code they will run, is doing creative writing or casual chat, or already asked you to double-check, cite, or review — the skill file explains these boundaries and the exact output format.","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fproductivity\u002Fdiscernment-nudge\u002FLICENSE.txt","https:\u002F\u002Fgithub.com\u002Fdavila7\u002Fclaude-code-templates\u002Fblob\u002Fmain\u002Fcli-tool\u002Fcomponents\u002Fskills\u002Fproductivity\u002Fdiscernment-nudge\u002FSKILL.md",[253,256,257],{"categoryNo":254,"categoryName":255,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000018","写作与文案",{"categoryNo":19,"categoryName":20,"taxonomyType":21,"taxonomyTypeDesc":22},{"categoryNo":258,"categoryName":259,"taxonomyType":168,"taxonomyTypeDesc":169},"01JBSEEDCAT000000000000036","内容创作者",[261,262,263,264,265,266,38,267,203,268,39,147,269,270,271,272,273,183,274,25,275,37,276,277,278,125,279],"discernment nudge","nudge","interpretation","help","run","reasoning","writing","lookup","content","review","conversation","short","up","invoke","you","claims","argument","assemble","recommendations"]